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The mangroves are likely going to jam up the rolling flow pattern for the Chaeto. And... unless this refugium is enormous, the mangrives will grow out of the tank sooner rather than later (1-3 years if you are faithful about the crucial daily misting of the leaves with fresh DI/RO water daily).
Without mangroves... I would put the lip on a short end wall (full length of that side) just under the surface where the incoming water drops as described earlier in this thread.
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