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What kind of lights did you change to? I changed from PC's to T5's well over a month ago and some of my pallys are just now getting their color back.
Just keep your water in good shape and be patient, hopefully they will color back up.
Also, were you using any type of actinic light with PC's and not with your new lighting system?
This same phenomenon occurs when I buy frags that were under MH lights. It sometimes takes weeks for them to color up.
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